Chapter 21 Start RStudio

Pause here if you are not going to start working right away. Once you start up RStudio, it will cost money to keep it running. It costs a few cents an hour, so it’s quite cheap as long as you use it responsibly. But it can add up if you leave it running for days or weeks when you don’t need it.

21.1 Start RStudio

AnVIL is very versatile and can scale up to use very powerful cloud computers. It’s very important that you select the cloud computing environment described here to avoid runaway costs.

  1. Open Terra - use a web browser to go to anvil.terra.bio

  2. In the drop-down menu on the left, navigate to “Workspaces”. Click the triple bar in the top left corner to access the menu. Click “Workspaces”.

    Screenshot of Terra drop-down menu.  The "hamburger" button to extend the drop-down menu is highlighted, and the menu item "Workspaces" is highlighted.

  3. Click on the name of your Workspace. You should be routed to a link that looks like: https://anvil.terra.bio/#workspaces/<billing-project>/<workspace-name>.

  4. Click on the cloud icon on the far right to access your Cloud Environment options.

    Screenshot of a Terra Workspace. The cloud icon to create a new cloud environment is highlighted.

  5. In the dialogue box, click the “Settings” button under RStudio

    Screenshot of the Cloud Environment Details dialogue box. The Settings button under RStudio is highlighted.

  6. You will see some details about the default RStudio cloud environment, and a list of costs because it costs a small amount of money to use cloud computing.

    Screenshot of the RStudio Cloud Environment dialogue box. The cost to run the environment is highlighted.

  7. Click the “CREATE” button.

    Screenshot of the RStudio Cloud Environment dialogue box. The "CREATE" button is highlighted.

  8. The dialogue box will close and you will be returned to your Workspace. You can see the status of your cloud environment by hovering over the RStudio logo. It will take a few minutes for Terra to request computers and install software.

    Screenshot of a Terra Workspace. The hovertext for the RStudio icon is highlighted, and indicates that the status of the environment is "Creating".

  9. When your environment is ready, its status will change to “Running”. Click on the RStudio logo to open a new dialogue box that will let you launch RStudio.

    Screenshot of a Terra Workspace. The hovertext for the RStudio icon is highlighted, and indicates that the status of the environment is "Running".

  10. Click the launch icon to open RStudio. This is also where you can pause, modify, or delete your environment when needed.

    Screenshot of the RStudio Environment Details dialogue box. The "Open" button is highlighted.

  11. You should now see the RStudio interface with information about the version printed to the console.

    Screenshot of the RStudio environment interface.