Overview

This book introduces WDL Workflows on AnVIL-powered-by-Terra. After introducing several concepts, including basic WDL syntax, we present hands-on exercises to run a workflow, write a WDL, localize a file, customize a Docker image, and join the Discourse. No local software installation is required as each exercise leverages web-based resources.

Skills Level

Genetics
Novice: No genetics knowledge needed

Programming skills
Novice: No programming experience needed

Learning Objectives

Understand when WDL Workflows are the right tool
Run a Workflow on AnVIL-powered-by-Terra
Write a WDL using Broad Methods Repository
Bring your own data to analyze
Customize your Docker environment
Join the conversation

Timing

It should take approximately 1.5-2 hours to complete this course, including hands-on exercises.

Branding

Due to differences in branding, some of the screenshots shown in this course may include different logos and colors than what you see on Terra. However, the same functions and menus are available regardless of whether you’re using AnVIL-powered-by-Terra, classic Terra, or another version of the platform.

AnVIL Collection

Please check out our full collection of AnVIL and related resources: https://hutchdatascience.org/AnVIL_Collection/